MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2693994115969149
cnr4.777413824034297
efc0.5900842108689666
fber105.775634765625
fwhmavg3.7758300000000005
fwhmx3.4956
fwhmy4.09205
fwhmz3.73984
icvscsf0.17748179444708526
icvsgm0.48423823841681224
icvswm0.33827996713610253
inumed0.9885095357894897
inurange0.3478137254714966
qi10.0
qi20.0006959910199092297
rpvecsf24.542969774954713
rpvegm10.482949744379466
rpvewm16.787952730152174
sizex180
sizey256
sizez256
snrcsf2.0827501238173336
snrgm9.894369971948361
snrtotal10.373536759959402
snrwm19.143490184112512
snrdcsf12.237819996032304
snrdgm29.90119649563193
snrdtotal30.416442676853553
snrdwm49.11031153889643
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6467746316604561
summarybgmad13.340219497680664
summarybgmean48.207393646240234
summarybgmedian47.05032730102539
summarybgn2600335.0
summarybgp0528.32278747558594
summarybgp9572.26354904174804
summarybgstdv13.709546089172363
summarycsfk3.006247309391937
summarycsfmad120.60350036621094
summarycsfmean270.8099060058594
summarycsfmedian249.1927032470703
summarycsfn13237.0
summarycsfp05110.13466339111329
summarycsfp95481.83045043945305
summarycsfstdv119.64147186279297
summarygmk0.16378258702875925
summarygmmad60.13751220703125
summarygmmean610.1122436523438
summarygmmedian608.8633422851562
summarygmn49168.0
summarygmp05510.8986480712891
summarygmp95713.7062072753906
summarygmstdv61.53571701049805
summarywmk1.1551804587890278
summarywmmad45.23692321777344
summarywmmean996.456298828125
summarywmmedian1000.0090942382812
summarywmn194259.0
summarywmp05900.2196350097656
summarywmp951074.0316162109375
summarywmstdv52.23741912841797
tpmoverlapcsf0.20185938477516174
tpmoverlapgm0.5209564566612244
tpmoverlapwm0.5113101005554199
wm2max0.6152888774538439

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum6a10f417f35d2d0f516aed1bc335af2f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.