MRIQC: individual T1w report

Summary

Subject ID: 017_ExercisePre.
Date and time: 2018-05-06, 23:48.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2693994115969149
cnr			4.777413824034297
efc			0.5900842108689666
fber			105.775634765625
fwhm	avg		3.7758300000000005
fwhm	x		3.4956
fwhm	y		4.09205
fwhm	z		3.73984
icvs	csf		0.17748179444708526
icvs	gm		0.48423823841681224
icvs	wm		0.33827996713610253
inu	med		0.9885095357894897
inu	range		0.3478137254714966
qi	1		0.0
qi	2		0.0006959910199092297
rpve	csf		24.542969774954713
rpve	gm		10.482949744379466
rpve	wm		16.787952730152174
size	x		180
size	y		256
size	z		256
snr	csf		2.0827501238173336
snr	gm		9.894369971948361
snr	total		10.373536759959402
snr	wm		19.143490184112512
snrd	csf		12.237819996032304
snrd	gm		29.90119649563193
snrd	total		30.416442676853553
snrd	wm		49.11031153889643
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6467746316604561
summary	bg	mad	13.340219497680664
summary	bg	mean	48.207393646240234
summary	bg	median	47.05032730102539
summary	bg	n	2600335.0
summary	bg	p05	28.32278747558594
summary	bg	p95	72.26354904174804
summary	bg	stdv	13.709546089172363
summary	csf	k	3.006247309391937
summary	csf	mad	120.60350036621094
summary	csf	mean	270.8099060058594
summary	csf	median	249.1927032470703
summary	csf	n	13237.0
summary	csf	p05	110.13466339111329
summary	csf	p95	481.83045043945305
summary	csf	stdv	119.64147186279297
summary	gm	k	0.16378258702875925
summary	gm	mad	60.13751220703125
summary	gm	mean	610.1122436523438
summary	gm	median	608.8633422851562
summary	gm	n	49168.0
summary	gm	p05	510.8986480712891
summary	gm	p95	713.7062072753906
summary	gm	stdv	61.53571701049805
summary	wm	k	1.1551804587890278
summary	wm	mad	45.23692321777344
summary	wm	mean	996.456298828125
summary	wm	median	1000.0090942382812
summary	wm	n	194259.0
summary	wm	p05	900.2196350097656
summary	wm	p95	1074.0316162109375
summary	wm	stdv	52.23741912841797
tpm	overlap	csf	0.20185938477516174
tpm	overlap	gm	0.5209564566612244
tpm	overlap	wm	0.5113101005554199
wm2max			0.6152888774538439

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	6a10f417f35d2d0f516aed1bc335af2f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.